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    "location": "index.html#I.-Introduction-1",
    "page": "Tutorial",
    "title": "I. Introduction",
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    "text": "The following sections contain a tutorial on how calculate alignment  quality scores as done in [1].[1] Pairwise vs multiple global network alignment, Vijayan, V., Krebs, E., Meng, L., and Milenković, T., under revision."
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    "page": "Tutorial",
    "title": "II. Installation",
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    "text": "Julia 0.6 needs to be installed prior to using this software. It can be installed by navigating to the base folder of this software, starting Julia, and executing the command julia install_pnavsmna.jl."
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    "page": "Tutorial",
    "title": "III. Calculating alignment quality scores under the PEF framework",
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    "text": "1. Start by navigating to the examples/ directory from the base directory of this package.2. Create a .csv file similar to the test_pef_df.csv file in the examples/ folder, that describes the network files, alignment file, and gene ontology ground-truth files used for calculating the alignment quality scores.3. Run the following command, which will output the alignment quality scores to the file test_pef_outdf.csv as a CSV table.julia ../bin/pnavsmna.jl pef test_pef_df.csv test_pef_outdf.csv"
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    "page": "Tutorial",
    "title": "IV. Calculating alignment quality scores under the MEF framework",
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    "text": "1. Start by navigating to the examples/ directory from the base directory of this package.2. Create a .csv file similar to the test_mef_df.csv file in the examples/ folder, that describes the network files, alignment file, and gene ontology ground-truth files used for calculating the alignment quality scores.3. Run the following command, which will output the alignment quality scores to the file test_mef_outdf.csv as a CSV table.julia ../bin/pnavsmna.jl mef test_mef_df.csv test_mef_outdf.csv"
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