## Examples

Calculate alignment scores in the PEF framework.
```
julia ../bin/pnavsmna.jl pef test_pef_df.csv test_pef_df.csv
```

Calculate alignment scores in the MEF framework (using Approach 2 for protein function prediction).
```
julia ../bin/pnavsmna.jl mef test_mef_df.csv test_mef_outdf.csv
```

Calculate alignment scores in the MEF framework (using Approach 3 for protein function prediction).
```
julia ../bin/pnavsmna.jl mef_approach3 test_mef_df.csv test_mef_approach3_outdf.csv
```
